Package index • AlphaSDM

Overview

AlphaSDM AlphaSDM-package: AlphaSDM: Species Distribution Modeling using Alpha Earth Embeddings

Connect to Earth Engine

setup_gee(): Connect AlphaSDM to Google Earth Engine (one-time)
gee_status(): Report the Google Earth Engine connection status
clear_gee_credentials(): Forget the saved Earth Engine project, and optionally sign out

Prepare data

format_data(): Standardize occurrence records for AlphaSDM
generate_pseudo_absences(): Generate pseudo-absences for presence-only data

Model and map

evaluate_models(): Evaluate SDM models on Alpha Earth embeddings
generate_map(): Generate an SDM suitability map

Evaluation metrics

calculate_classifier_metrics(): Calculate discrimination and calibration metrics
calculate_cbi(): Calculate the Continuous Boyce Index

Earth Engine tasks and assets

sdm_gee_status(): Show the status of recent AlphaSDM Earth Engine batch tasks
sdm_clean_assets(): Remove leftover AlphaSDM temporary assets
sdm_verbose(): Turn AlphaSDM console output on or off